Zhihui
4 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/hisat2.wdl
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| command <<< | command <<< | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| hisat2 -t -p $nt -x ${idx}/${idx_prefix} --pen-cansplice ${pen_cansplice} --pen-noncansplice ${pen_noncansplice} --pen-intronlen ${pen_intronlen} --min-intronlen ${min_intronlen} --max-intronlen ${max_intronlen} --maxins ${maxins} --minins ${minins} --un-conc-gz ${sample_id}_un.fq.gz -1 ${Trim} -S ${sample_id}.sam | |||||
| hisat2 -t -p $nt -x ${idx}/${idx_prefix} --pen-cansplice ${pen_cansplice} --pen-noncansplice ${pen_noncansplice} --pen-intronlen ${pen_intronlen} --min-intronlen ${min_intronlen} --max-intronlen ${max_intronlen} --maxins ${maxins} --minins ${minins} --un-conc-gz ${sample_id}_un.fq.gz -U ${Trim} -S ${sample_id}.sam | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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