rnaseq_fastp/inputs

{
    "{{ project_name }}.sample_id": "{{ sample_id }}",
    "{{ project_name }}.read1": "{{ read1 }}",
    "{{ project_name }}.read2": "{{ read2 }}",
    "{{ project_name }}.idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
    "{{ project_name }}.gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",
    "{{ project_name }}.idx_prefix": "genome_snp_tran",
    "{{ project_name }}.hisat2.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2",
    "{{ project_name }}.hisat2.cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
    "{{ project_name }}.samtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
    "{{ project_name }}.samtools.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "{{ project_name }}.stringtie.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4",
    "{{ project_name }}.stringtie.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "{{ project_name }}.fastp.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
    "{{ project_name }}.fastp.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "{{ project_name }}.adapter_sequence": "{{ adapter_sequence if adapter_sequence != '' else 'AGATCGGAAGAGCACACGTCTGAACTCCAGTCA' }}",
    "{{ project_name }}.adapter_sequence_r2": "{{ adapter_sequence_r2 if adapter_sequence_r2 != '' else 'AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT' }}"
}