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tasks/count.wdl
Целия файл
| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| mkdir -p /cromwell_root/tmp/ballgown/ | |||||
| cp -r ${sep=" " ballgown} /cromwell_root/tmp/ballgown/ | |||||
| mkdir -p /cromwell_root/tmp/ballgown/${sample_id} | |||||
| cp -r ${sep=" " ballgown} /cromwell_root/tmp/ballgown/${sample_id} | |||||
| cd /cromwell_root/tmp/ | cd /cromwell_root/tmp/ | ||||
| count -g ${sample_id}_gene_count_matrix.csv -t ${sample_id}_transcript_count_matrix.csv | count -g ${sample_id}_gene_count_matrix.csv -t ${sample_id}_transcript_count_matrix.csv | ||||
| >>> | >>> |
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