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set default disk size on some software

tags/v0.1.0
stead99 4年前
コミット
29e372d65b
2個のファイルの変更12行の追加2行の削除
  1. +5
    -0
      defaults
  2. +7
    -2
      inputs

+ 5
- 0
defaults ファイルの表示

@@ -41,17 +41,22 @@
"maximum_fraction_of_muliplelocationmapped_reads":"0.95",
"fastqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
"fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
"fastqc_disk_size": "150",
"qualimapBAMqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
"qualimapBAMqc_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
"qualimapBAMqc_disk_size": "500",
"qualimapRNAseq_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
"qualimapRNAseq_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
"qualimapRNAseq_disk_size": "500",
"fastqscreen_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
"fastqscreen_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
"screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
"fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
"fastqscreen_disk_size": "200",
"ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/",
"multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
"multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",
"multiqc_disk_size": "100",
"ballgown_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/pgx-ballgown:0.0.1",
"ballgown_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc"
}

+ 7
- 2
inputs ファイルの表示

@@ -44,18 +44,23 @@
"{{ project_name }}.maximum_fraction_of_muliplelocationmapped_reads": "{{ maximum_fraction_of_muliplelocationmapped_reads }}",
"{{ project_name }}.fastqc_cluster_config": "{{ fastqc_cluster_config }}",
"{{ project_name }}.fastqc_docker": "{{ fastqc_docker }}",
"{{ project_name }}.fastqc_disk_size": "{{ fastqc_disk_size }}",
"{{ project_name }}.qualimapBAMqc_docker": "{{ qualimapBAMqc_docker }}",
"{{ project_name }}.qualimapBAMqc_cluster_config": "{{ qualimapBAMqc_cluster_config }}",
"{{ project_name }}.qualimapBAMqc_disk_size": "{{ qualimapBAMqc_disk_size }}",
"{{ project_name }}.qualimapRNAseq_docker": "{{ qualimapRNAseq_docker }}",
"{{ project_name }}.qualimapRNAseq_cluster_config": "{{ qualimapRNAseq_cluster_config }}",
"{{ project_name }}.qualimapRNAseq_disk_size": "{{ qualimapRNAseq_disk_size }}",
"{{ project_name }}.fastqscreen_docker": "{{ fastqscreen_docker }}",
"{{ project_name }}.fastqscreen_cluster_config": "{{ fastqscreen_cluster_config }}",
"{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}",
"{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}",
"{{ project_name }}.fastqscreen_disk_size": "{{ fastqscreen_disk_size }}",
"{{ project_name }}.ref_dir": "{{ ref_dir }}",
"{{ project_name }}.multiqc_cluster_config": "{{ multiqc_cluster_config }}",
"{{ project_name }}.multiqc_docker": "{{ multiqc_docker }}",
"{{ project_name }}.multiqc_disk_size": "{{ multiqc_disk_size }}",
"{{ project_name }}.ballgown_docker": "{{ ballgown_docker }}",
"{{ project_name }}.ballgown_cluster": "{{ ballgown_cluster }}",
"{{ project_name }}.disk_size": "{{ disk_size if disk_size != '' else 200}}"
"{{ project_name }}.ballgown_cluster": "{{ ballgown_cluster }}"
"{{ project_name }}.disk_size": "{{ disk_size if disk_size != '' else 200}}",
}

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