@@ -7,7 +7,7 @@ task count { | |||
String disk_size | |||
command <<< | |||
mkdir -p /cromwell_root/tmp/${sample_id} | |||
mkdir -p /cromwell_root/tmp/ballgown/${sample_id} | |||
cp -r ${sep=" " ballgown} /cromwell_root/tmp/ballgown/${sample_id} | |||
count -g ${sample_id}_gene_count_matrix.csv -t ${sample_id}_transcript_count_matrix.csv | |||
>>> |