first commit

workflow.wdl

@@ -97,8 +97,8 @@ workflow {{ project_name }} {
 
 		call MD5.MD5 as MD5 {
 		input:
-		file1 = hisat2.bamqc_zip,
-		file2 = hisat2.rnaseq_zip,
+		file1 = qualimapBAMqc.bamqc_zip,
+		file2 = qualimapRNAseq.rnaseq_zip,
 		docker = docker,
 		disk_size = disk_size,
 		cluster_config=cluster_config