fastp/inputs

{
	"{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",
	"{{ project_name }}.idx": "{{ idx }}",
	"{{ project_name }}.gtf": "{{ gtf }}",
	"{{ project_name }}.idx_prefix": "{{ idx_prefix }}",
	"{{ project_name }}.hisat2.docker": "{{ hisat2.docker }}",
	"{{ project_name }}.hisat2.cluster": "{{ hisat2.cluster }}",
	"{{ project_name }}.samtools.docker": "{{ samtools.docker }}",
	"{{ project_name }}.samtools.cluster": "{{ samtools.cluster }}",
	"{{ project_name }}.stringtie.docker": "{{ stringtie.docker }}",
	"{{ project_name }}.stringtie.cluster": "{{ stringtie.cluster }}",
	"{{ project_name }}.fastp.docker": "{{ fastp.docker }}",
	"{{ project_name }}.fastp.cluster": "{{ fastp.cluster }}",
	"{{ project_name }}.fasta": "{{ fasta }}",
	"{{ project_name }}.fastqc.disk_size": "{{ fastqc.disk_size }}",
	"{{ project_name }}.gtf": "{{ gtf }}",
	"{{ project_name }}.fastqscreen.cluster_config": "{{ fastqscreen.cluster_config }}",
	"{{ project_name }}.fastqc.cluster_config": "{{ fastqc.cluster_config }}",
	"{{ project_name }}.qualimapBAMqc.disk_size": "{{ qualimapBAMqc.disk_size }}",
	"{{ project_name }}.fastqc.docker": "{{ fastqc.docker }}",
	"{{ project_name }}.fastqscreen.docker": "{{ fastqscreen.docker }}",
	"{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}",
	"{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}",
	"{{ project_name }}.multiqc.cluster_config": "{{ multiqc.cluster_config }}",
	"{{ project_name }}.multiqc.docker": "{{ multiqc.docker }}",
	"{{ project_name }}.qualimapBAMqc.docker": "{{ qualimapBAMqc.docker }}",
	"{{ project_name }}.qualimapBAMqc.cluster_config": "{{ qualimapBAMqc.cluster_config }}",
	"{{ project_name }}.fastqscreen.disk_size": "{{ fastqscreen.disk_size }}",
	"{{ project_name }}.multiqc.disk_size": "{{ multiqc.disk_size }}",
	"{{ project_name }}.ref_dir": "{{ ref_dir }}",
	"{{ project_name }}.trim_front1": "{{ trim_front1 }}",
	"{{ project_name }}.trim_tail1": "{{ trim_tail1 }}",
	"{{ project_name }}.max_len1": "{{ max_len1 }}",
	"{{ project_name }}.trim_front2": "{{ trim_front2 }}",
	"{{ project_name }}.trim_tail2": "{{ trim_tail2 }}",
	"{{ project_name }}.max_len2": "{{ max_len2 }}",
	"{{ project_name }}.adapter_sequence": "{{ adapter_sequence }}",
	"{{ project_name }}.adapter_sequence_r2": "{{ adapter_sequence_r2 }}",
	"{{ project_name }}.disable_adapter_trimming": "{{ disable_adapter_trimming }}",
	"{{ project_name }}.length_required": "{{ length_required }}",
	"{{ project_name }}.UMI": "{{ UMI }}",
	"{{ project_name }}.umi_loc": "{{ umi_loc }}",
	"{{ project_name }}.umi_len": "{{ umi_len }}",
	"{{ project_name }}.length_required": "{{ length_required }}",
	"{{ project_name }}.qualified_quality_phred": "{{ qualified_quality_phred }}",
	"{{ disable_quality_filtering }}.umi_loc": "{{ disable_quality_filtering }}"
}