import "./tasks/fastp.wdl" as fastp workflow {{ project_name }} { File inputSamplesFile Array[Array[File]] inputSamples = read_tsv(inputSamplesFile) scatter (quartet in inputSamples){ call fastp.fastp as fastp { input: sample_id=quartet[2], read1=quartet[0], read2=quartet[1], docker = fastp_docker, cluster = fastp_cluster } } }