......

inputs

@@ -43,5 +43,5 @@
 	"{{ project_name }}.umi_len": "{{ umi_len }}",
 	"{{ project_name }}.length_required": "{{ length_required }}",
 	"{{ project_name }}.qualified_quality_phred": "{{ qualified_quality_phred }}",
-	"{{ disable_quality_filtering }}.umi_loc": "{{ disable_quality_filtering }}"
+	"{{ project_name }}.disable_quality_filtering": "{{ disable_quality_filtering }}"
 }

workflow.wdl

@@ -11,7 +11,9 @@ workflow {{ project_name }} {
 		input: 
 		sample_id=quartet[2],
 		read1=quartet[0], 
-		read2=quartet[1]
+		read2=quartet[1],
+		docker = fastp.docker,
+		cluster = fastp.cluster
 		}
 	}
 }