......

workflow.wdl

@@ -5,15 +5,6 @@ workflow {{ project_name }} {
 	File inputSamplesFile
 	Array[Array[File]] inputSamples = read_tsv(inputSamplesFile)
 	
-	String fasta
-	String idx_prefix
-	File screen_ref_dir
-	File fastq_screen_conf
-    	File idx
-	File gtf
-	File ref_dir
-
-
 	scatter (quartet in inputSamples){
 
 		call fastp.fastp as fastp {