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dev
Zhihui 4 年前
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共有 2 个文件被更改,包括 3 次插入7 次删除
  1. +2
    -2
      tasks/fastp.wdl
  2. +1
    -5
      workflow.wdl

+ 2
- 2
tasks/fastp.wdl 查看文件

File read2 File read2
String adapter_sequence String adapter_sequence
String adapter_sequence_r2 String adapter_sequence_r2
String docker
String cluster
String fastp_docker
String fastp_cluster
String umi_loc String umi_loc
Int trim_front1 Int trim_front1
Int trim_tail1 Int trim_tail1

+ 1
- 5
workflow.wdl 查看文件

import "./tasks/fastp.wdl" as fastp import "./tasks/fastp.wdl" as fastp

workflow {{ project_name }} {
workflow {{ project_name }} {
File inputSamplesFile File inputSamplesFile
Array[Array[File]] inputSamples = read_tsv(inputSamplesFile) Array[Array[File]] inputSamples = read_tsv(inputSamplesFile)
scatter (quartet in inputSamples){ scatter (quartet in inputSamples){

call fastp.fastp as fastp { call fastp.fastp as fastp {
input: input:
sample_id=quartet[2], sample_id=quartet[2],

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