fastp/defaults

{
    "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
    "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf", 
    "idx_prefix": "genome_snp_tran", 
    "hisat2.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2", 
    "hisat2.cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", 
    "samtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", 
    "samtools.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", 
    "stringtie.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4", 
    "stringtie.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", 
    "fastp.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6", 
    "fastp.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", 
    "fasta": "GRCh38.d1.vd1.fa", 
    "fastqc.disk_size": "150", 
    "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf", 
    "fastqscreen.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
    "fastqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", 
    "qualimapBAMqc.disk_size": "500", 
    "fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", 
    "fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0", 
    "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/", 
    "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf", 
    "multiqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", 
    "multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", 
    "qualimapBAMqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", 
    "qualimapBAMqc.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", 
    "fastqscreen.disk_size": "100", 
    "multiqc.disk_size": "100", 
    "ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/", 
    "trim_front1": "0", 
    "trim_tail1": "0", 
    "max_len1": "0", 
    "trim_front2": "0", 
    "trim_tail2": "0",  
    "max_len2": "0", 
    "adapter_sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA", 
    "adapter_sequence_r2": "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT", 
    "disable_adapter_trimming": "0", 
    "length_required": "50", 
    "UMI": "0", 
    "umi_len": "0", 
    "umi_loc": "umi_loc", 
    "length_required": "20", 
    "qualified_quality_phred": "20", 
    "disable_quality_filtering": "0"
}