......

defaults

@@ -1,27 +1,27 @@
 {   
-    "fastp_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6", 
-    "fastp_cluster": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", 
-    "trim_front1": "0", 
-    "trim_tail1": "0", 
-    "max_len1": "0", 
-    "trim_front2": "0", 
-    "trim_tail2": "0",  
-    "max_len2": "0", 
-    "adapter_sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA", 
-    "adapter_sequence_r2": "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT", 
-    "disable_adapter_trimming": "0", 
-    "length_required": "50", 
-    "length_required1": "20", 
-    "UMI": "0", 
-    "umi_len": "0", 
-    "umi_loc": "umi_loc", 
-    "qualified_quality_phred": "20", 
+    "fastp_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
+    "fastp_cluster": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
+    "trim_front1": "0",
+    "trim_tail1": "0",
+    "max_len1": "0",
+    "trim_front2": "0",
+    "trim_tail2": "0",
+    "max_len2": "0",
+    "adapter_sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA",
+    "adapter_sequence_r2": "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT",
+    "disable_adapter_trimming": "0",
+    "length_required": "50",
+    "length_required1": "20",
+    "UMI": "0",
+    "umi_len": "0",
+    "umi_loc": "umi_loc",
+    "qualified_quality_phred": "20",
     "disable_quality_filtering": "1",
-    "hisat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2", 
-    "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", 
-    "idx_prefix": "genome_snp_tran", 
+    "hisat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2",
+    "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
+    "idx_prefix": "genome_snp_tran",
     "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
-    "fasta": "GRCh38.d1.vd1.fa", 
+    "fasta": "GRCh38.d1.vd1.fa",
     "pen_cansplice":"0",
     "pen_noncansplice":"3",
     "pen_intronlen":"G,-8,1",
@@ -29,32 +29,32 @@
     "max_intronlen":"500000",
     "maxins":"500",
     "minins":"0",
-    "samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", 
-    "samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", 
+    "samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
+    "samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
     "insert_size":"8000",
-    "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf", 
-    "stringtie_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4", 
-    "stringtie_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", 
+    "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",
+    "stringtie_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4",
+    "stringtie_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
     "minimum_length_allowed_for_the_predicted_transcripts":"200",
     "minimum_isoform_abundance":"0.01",
     "Junctions_no_spliced_reads":"10",
     "maximum_fraction_of_muliplelocationmapped_reads":"0.95",
-    "fastqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", 
-    "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", 
+    "fastqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
+    "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
     "fastqc_disk_size": "150",
-    "qualimapBAMqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", 
-    "qualimapBAMqc_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", 
-    "qualimapBAMqc_disk_size": "500", 
-    "qualimapRNAseqqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", 
-    "qualimapRNAseqqc_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", 
-    "qualimapRNAseqqc_disk_size": "500", 
-    "fastqscreen_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0", 
+    "qualimapBAMqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
+    "qualimapBAMqc_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
+    "qualimapBAMqc_disk_size": "500",
+    "qualimapRNAseqqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
+    "qualimapRNAseqqc_cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
+    "qualimapRNAseqqc_disk_size": "500",
+    "fastqscreen_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
     "fastqscreen_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
-    "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/", 
-    "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf", 
-    "fastqscreen_disk_size": "100", 
+    "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
+    "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
+    "fastqscreen_disk_size": "100",
     "ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/",
-    "multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", 
-    "multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", 
-    "multiqc_disk_size": "100"   
+    "multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
+    "multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",
+    "multiqc_disk_size": "100"
     }