......

workflow.wdl

@@ -11,21 +11,7 @@ import "./tasks/multiqc.wdl" as multiqc
 workflow {{ project_name }} {
 	
 	
-	String stringtie_docker
-	String stringtie_cluster
-	String multiqc_cluster_config
-	String multiqc_docker
-	Int multiqc_disk_size
-	Int trim_front1 
-	Int trim_tail1 
-	Int max_len1 
-	Int trim_front2 
-	Int trim_tail2  
-	Int max_len2 
-	Int disable_adapter_trimming
-	Int length_required
-	Int umi_len
-	Int UMI
+	
 	Int qualified_quality_phred
 	Int length_required1
 	Int disable_quality_filtering