You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
658B
658B
ecDNA Structure Reconstruction
This APP developed for ecDNA structure construction
Accepted data
- sorted deduped bam file and corresponding bam index file
Getting Started
# Activate the choppy environment
$ open-choppy-env
# Install the APP
$ choppy install YaqingLiu/variant-calling [-f]
# List the parameters
$ choppy samples YaqingLiu/variant-calling-latest [--no-default]
# Submit you task with the `samples.csv file` and `project name`
$ choppy batch YaqingLiu/variant-calling-latest samples.csv -p Project [-l project:Label]
# Query the status of all tasks in the project
$ choppy query -L project:Label | grep "status"