更新 'tasks/prepareaa.wdl'

tasks/prepareaa.wdl

@@ -20,8 +20,8 @@ task prepareaa {
     export NCM_HOME=/home/programs/NGSCheckMate-master/ 
                 
     mkdir -p /cromwell_root/tmp/aaresult
-    cd /cromwell_root/tmp/aaresult 
     /home/programs/PrepareAA-master/PrepareAA.py -s ${sample_name} -t 20 --cnvkit_dir /home/programs/cnvkit.py --sorted_bam ${dedup_bam} --run_AA --ref GRCh38 -o ${sample_id}
+    cp ${sample_id}  /cromwell_root/tmp/aaresult         
   >>>
 
   runtime {