prepareaa/workflow.wdl

import "./tasks/prepareaa.wdl" as prepareaa

workflow  {{ project_name }}  {

    File dedup_bam
    File dedup_bamindex
  
    String sample_name
    String sample_id
    String prepareaadocker
    String BIGcluster_config
    String disk_size



    call prepareaa.prepareaa as prepareaa {
        input:
        sample_name=sample_name,
        sample_id=sample_id,
        dedup_bam=dedup_bam,
        dedup_bamindex=dedup_bamindex,
        docker=prepareaadocker,
        cluster_config=BIGcluster_config,
        disk_size=disk_size
    }
}