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WGS-WES_benchmark3
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WGS-WES_benchmark3/defaults

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  1. {

  2.   "benchmarking_dir": "oss://pgx-result/renluyao/manuscript_v3.0/NIST/",

  3.   "fasta": "GRCh38.d1.vd1.fa",

  4.   "BENCHMARKdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",

  5.   "disk_size": "200",

  6.   "SMALLcluster_config": "OnDemand bcs.ps.g.xlarge img-ubuntu-vpc",

  7.   "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  8.   "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/NIST/HG001_GRCh38_GIAB_highconf_CG-IllFB-IllGATKHC-Ion-10X-SOLID_CHROM1-X_v.3.3.2_highconf_nosomaticdel_noCENorHET7.bed",

  9.   "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  10.   "BIGcluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  11.   "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  12.   "filtered_bed":"oss://pgx-result/renluyao/manuscript_v3.0/NIST/HG001_GRCh38_GIAB_highconf_CG-IllFB-IllGATKHC-Ion-10X-SOLID_CHROM1-X_v.3.3.2_highconf_nosomaticdel_noCENorHET7.bed"

  13. }