WES_for_NIST_update/defaults

{
  "benchmarking_dir": "oss://pgx-result/renluyao/manuscript_v3.0/NIST/",
  "SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
  "fasta": "GRCh38.d1.vd1.fa",
  "BENCHMARKdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",
  "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "BEDTOOLSdocker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",
  "disk_size": "200",
  "FASTQCdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:0.11.8",
  "SMALLcluster_config": "OnDemand bcs.ps.g.xlarge img-ubuntu-vpc",
  "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
  "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/NIST/HG001_GRCh38_GIAB_highconf_CG-IllFB-IllGATKHC-Ion-10X-SOLID_CHROM1-X_v.3.3.2_highconf_nosomaticdel_noCENorHET7.bed",
  "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "BIGcluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
  "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
  "FASTQSCREENdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
  "SENTIEON_LICENSE": "192.168.0.55:8990",
  "SENTIEONdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2019.11.28",
  "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
  "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
  "dbsnp": "dbsnp_146.hg38.vcf",
  "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/"
}