linzipeng
6 years ago
1 changed files with 3 additions and 1 deletions
+ 3
- 1
tasks/Dedup.wdl
View File
| @@ -9,7 +9,9 @@ task Dedup { | |||
| command <<< | |||
| set -o pipefail | |||
| set -e | |||
| /src/Bismark-0.18.2/deduplicate_bismark -p --bam ${unsorted_bam} --output_dir ./ | |||
| /src/Bismark-0.18.2/deduplicate_bismark -p --bam ${unsorted_bam} | |||
| outputdir= dirname ${unsorted_bam} | |||
| cp ${outputdir} ./ | |||
| >>> | |||
| runtime { | |||
| docker:docker | |||
Loading…