linzipeng
6 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/Dedup.wdl
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| @@ -12,7 +12,7 @@ task Dedup { | |||
| /src/Bismark-0.18.2/deduplicate_bismark -p --bam ${unsorted_bam} | |||
| outputdir= dirname ${unsorted_bam} | |||
| bam= "${sample}_R1_bismark_bt2_pe.deduplicated.bam" | |||
| cp ${outputdir}/${bam} ./ | |||
| cp $outputdir/$bam ./ | |||
| >>> | |||
| runtime { | |||
| docker:docker | |||
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