linzipeng
6 years ago
1 changed files with 7 additions and 6 deletions
+ 7
- 6
tasks/Call_meth.wdl
View File
| } | } | ||||
| output { | output { | ||||
| File bedGraph = "${sample}_R1_bismark_bt2_pe.bedGraph.gz" | |||||
| File cov = "${sample}_R1_bismark_bt2_pe.bismark.cov.gz" | |||||
| File splitting_report = "${sample}_R1_bismark_bt2_pe_splitting_report.txt" | |||||
| File CHG_context = "CHG_context_${sample}_R1_bismark_bt2_pe.txt" | |||||
| File CHH_context = "CHH_context_${sample}_R1_bismark_bt2_pe.txt" | |||||
| File CpG_context = "CpG_context_${sample}_R1_bismark_bt2_pe.txt" | |||||
| File bedGraph = "${sample}_R1_bismark_bt2_pe.deduplicated.bedGraph.gz" | |||||
| File cov = "${sample}_R1_bismark_bt2_pe.bismark.deduplicated.cov.gz" | |||||
| File splitting_report = "${sample}_R1_bismark_bt2_pe_splitting_report.deduplicated.txt" | |||||
| File CHG_context = "CHG_context_${sample}_R1_bismark_bt2_pe.deduplicated.txt" | |||||
| File CHH_context = "CHH_context_${sample}_R1_bismark_bt2_pe.deduplicated.txt" | |||||
| File CpG_context = "CpG_context_${sample}_R1_bismark_bt2_pe.deduplicated.txt" | |||||
| File Mbias = "${sample}_R1_bismark_bt2_pe.deduplicated.M-bias.txt" | |||||
| } | } | ||||
| } | } |
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