linzipeng
6 years ago
1 changed files with 1 additions and 1 deletions
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- 1
tasks/Dedup.wdl
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| @@ -9,7 +9,7 @@ task Dedup { | |||
| command <<< | |||
| set -o pipefail | |||
| set -e | |||
| /src/Bismark-0.20.1/deduplicate_bismark -p --bam ./$inputfile --output_dir ./ | |||
| /src/Bismark-0.20.1/deduplicate_bismark -p --bam ${unsorted_bam} --output_dir ./ | |||
| >>> | |||
| runtime { | |||
| docker:docker | |||
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