Haplotyper_Hardfiltration_Annovar/inputs

{
  "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
  "{{ project_name }}.ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "{{ project_name }}.dbsnp": "dbsnp_146.hg38.vcf",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
  "{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
  "{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc' }}",
  "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
  "{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "{{ project_name }}.sample": "{{ sample_name }}",
  "{{ project_name }}.disk_size": "{{ 200 }}", 
  "{{ project_name }}.hardfiltration_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
  "{{ project_name }}.annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
  "{{ project_name }}.recaled_bam": "{{ recaled_bam }}",
  "{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/",
  "{{ project_name }}.recaled_bam_index": "{{ recaled_bam_index }}"
}