2 changed files with 4 additions and 4 deletions
+ 2
- 2
tasks/Annovar.wdl
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| } | } | ||||
| output { | output { | ||||
| File avinput = "${sample}.avinput" | File avinput = "${sample}.avinput" | ||||
| File multianno_txt = "${sample}.hg19_multianno.txt" | |||||
| File multianno_vcf = "${sample}.hg19_multianno.vcf" | |||||
| File multianno_txt = "${sample}.hg38_multianno.txt" | |||||
| File multianno_vcf = "${sample}.hg38_multianno.vcf" | |||||
| } | } | ||||
| } | } |
+ 2
- 2
workflow.wdl
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| input: | input: | ||||
| docker=hardfiltration_docker, | docker=hardfiltration_docker, | ||||
| sample=sample, | sample=sample, | ||||
| vcf_index=Haplotyper.vcf_index, | |||||
| vcf_index=Haplotyper.vcf_idx, | |||||
| disk_size=disk_size, | disk_size=disk_size, | ||||
| vcf_file=Haplotyper.vcf_file, | |||||
| vcf_file=Haplotyper.vcf, | |||||
| cluster_config=cluster_config | cluster_config=cluster_config | ||||
| } | } | ||||
| call Annovar.Annovar as Annovar { | call Annovar.Annovar as Annovar { |
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