Nevar pievienot vairāk kā 25 tēmas
Tēmai ir jāsākas ar burtu vai ciparu, tā var saturēt domu zīmes ('-') un var būt līdz 35 simboliem gara.
stead99
6c7490240b
revise readme
|
pirms 4 gadiem | |
|---|---|---|
| conf | pirms 4 gadiem | |
| tasks | pirms 4 gadiem | |
| README.md | pirms 4 gadiem | |
| defaults | pirms 4 gadiem | |
| inputs | pirms 4 gadiem | |
| workflow.wdl | pirms 4 gadiem | |
README.md
Author: Jun Shang
Email: shangjunv@163.com
Last Updates: 29/06/2020
Requirements
- choppy
- Ali-Cloud
$ source activate choppy/open-choppy-env
$ choppy install junshang/rnaseq-engineering:tag
$ choppy apps
quick start
$ choppy samples junshang/rnaseq-engineering-latest > samples.csv
$ choppy batch junshang/rnaseq-engineering-latest samples.csv -p Your_project_name
| sample_id | disk_size | read1 | read2 | pre_alignment_qc | qualimap_qc | trim_adapter |
|---|---|---|---|---|---|---|
| FDU_D5 | 200 | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R1_400k.gz | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R2_400k.gz | false | true | true |