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- task ballgown {
- File gene_abundance
- String base = basename(gene_abundance, ".gene.abundance.txt")
- Array[File] ballgown
- String docker
- String cluster
-
- command <<<
- mkdir -p /cromwell_root/tmp/ballgown
- cp -r ${sep=" " ballgown} /cromwell_root/tmp/ballgown
- Rscript /usr/bin/ballgown.R /cromwell_root/tmp/ballgown/${base} ${base}.txt
- >>>
-
- runtime {
- docker: docker
- cluster: cluster
- systemDisk: "cloud_ssd 40"
- dataDisk: "cloud_ssd 150 /cromwell_root/"
- }
-
- output {
- File mat_expression = "${base}.txt"
- }
- }
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