{
  "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
  "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",
  "idx_prefix": "genome_snp_tran",
  "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
  "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
  "fastqscreen_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
  "fastqscreen_cluster": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
  "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
  "fastqc_cluster": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
  "fastp_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
  "fastp_cluster": "OnDemand bcs.a2.xlarge img-ubuntu-vpc",
  "adapter_sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA",
  "adapter_sequence_r2": "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT",
  "hisat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2",
  "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
  "samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
  "samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
  "qualimap_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
  "qualimap_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
  "stringtie_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4",
  "stringtie_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
  "ballgown_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/pgx-ballgown:0.0.1",
  "ballgown_cluster": "OnDemand bcs.ps.g.large img-ubuntu-vpc",
  "count_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/count:v1.0",
  "count_cluster": "OnDemand bcs.ps.g.large img-ubuntu-vpc",
  "insert_size":"8000",
  "count_length": "150",
  "trim_adapter": true,
  "pre_alignment_qc": true,
  "qualimap_qc": true
}