{
    "{{ project_name }}.read1": "{{ read1 }}",
    "{{ project_name }}.read2": "{{ read2 }}",
    "{{ project_name }}.idx": "{{ idx }}",
    "{{ project_name }}.gtf": "{{ gtf }}",
    "{{ project_name }}.idx_prefix": "{{ idx_prefix }}",
    "{{ project_name }}.hisat2.docker": "{{ hisat2_docker }}",
    "{{ project_name }}.hisat2.cluster": "{{ hisat2_cluster }}",
    "{{ project_name }}.samtools.docker": "{{ samtools_docker }}",
    "{{ project_name }}.samtools.cluster": "{{ samtools_cluster }}",
    "{{ project_name }}.stringtie.docker": "{{ stringtie_docker }}",
    "{{ project_name }}.stringtie.cluster": "{{ stringtie_cluster }}"
    "{{ project_name }}.ballgown.docker": "{{ ballgown_docker }}",
    "{{ project_name }}.ballgown.cluster": "{{ ballgown_cluster }}"
}