Se han modificado 2 ficheros con 13 adiciones y 11 borrados
+ 11
- 11
defaults
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| @@ -1,13 +1,13 @@ | |||
| { | |||
| "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/", | |||
| "gtf": "oss://pgx-reference-data/reference/tophat2/annotation/gencode.v22.annotation.gtf", | |||
| "idx_prefix": "genome_snp_tran", | |||
| "hisat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2", | |||
| "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | |||
| "samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", | |||
| "samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", | |||
| "stringtie_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4", | |||
| "stringtie_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", | |||
| "ballgown_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/pgx-ballgown:0.0.1", | |||
| "ballgown_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc" | |||
| "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/", | |||
| "gtf": "oss://pgx-reference-data/reference/tophat2/annotation/gencode.v22.annotation.gtf", | |||
| "idx_prefix": "genome_snp_tran", | |||
| "hisat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2", | |||
| "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | |||
| "samtools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", | |||
| "samtools_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", | |||
| "stringtie_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4", | |||
| "stringtie_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", | |||
| "ballgown_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/pgx-ballgown:0.0.1", | |||
| "ballgown_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc" | |||
| } | |||
+ 2
- 0
workflow.wdl
Ver fichero
| @@ -10,6 +10,8 @@ workflow {{ project_name }} { | |||
| File idx | |||
| String idx_prefix | |||
| File gtf | |||
| String docker | |||
| String cluster | |||
| call hisat2.hisat2 as hisat2 { | |||
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