revise fastp

tasks/ballgown.wdl

@@ -1,10 +1,10 @@
 task ballgown {
     File gene_abundance
     String base=basename(gene_abundance, ".gene.abundance.txt")
-    Array[File] ballgown
     String docker
     String cluster
     String disk_size
+    Array[File] ballgown
 
     command <<<
       mkdir -p /cromwell_root/tmp/${base}

tasks/fastp.wdl

@@ -1,7 +1,7 @@
 task fastp {
-    String sample_id
     File read1
     File read2
+    String sample_id
     String adapter_sequence
     String adapter_sequence_r2
     String docker

workflow.wdl

@@ -2,7 +2,6 @@ import "./tasks/fastqc.wdl" as fastqc
 import "./tasks/fastqscreen.wdl" as fastqscreen
 import "./tasks/fastp.wdl" as fastp
 import "./tasks/qualimap.wdl" as qualimap
-import "./tasks/hisat2_fp.wdl" as hisat2_fp
 import "./tasks/hisat2.wdl" as hisat2
 import "./tasks/samtools.wdl" as samtools
 import "./tasks/stringtie.wdl" as stringtie