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tasks/ballgown.wdl
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| command <<< | command <<< | ||||
| mkdir -p /cromwell_root/tmp/${base} | mkdir -p /cromwell_root/tmp/${base} | ||||
| cp -r ${sep=" " ballgown} /cromwell_root/tmp/${base} | cp -r ${sep=" " ballgown} /cromwell_root/tmp/${base} | ||||
| Rscript /usr/bin/ballgown.R /cromwell_root/tmp/${base} ${base}.txt | |||||
| ballgown /cromwell_root/tmp/${base} ${base}.txt | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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