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tasks/mixcr.wdl
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| @@ -10,7 +10,7 @@ task mixcr { | |||
| String disk_size | |||
| command <<< | |||
| mixcr align -p rna-seq -s hsa -OallowPartialAlignments=true ${read1} ${read2} ${base}.vdjca | |||
| mixcr align -t 4 -p rna-seq -s hsa -OallowPartialAlignments=true ${read1} ${read2} ${base}.vdjca | |||
| mixcr assemblePartial ${base}.vdjca ${base}_rescued_1.vdjca | |||
| mixcr assemblePartial ${base}_rescued_1.vdjca ${base}_rescued_2.vdjca | |||
| mixcr extend ${base}_rescued_2.vdjca ${base}_rescued_2_extended.vdjca | |||
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