|
|
|
|
|
|
|
|
File fastq_screen_conf |
|
|
File fastq_screen_conf |
|
|
File read1 |
|
|
File read1 |
|
|
File read2 |
|
|
File read2 |
|
|
|
|
|
String disk_size |
|
|
String fastqc_docker |
|
|
String fastqc_docker |
|
|
String fastqscreen_docker |
|
|
String fastqscreen_docker |
|
|
String cluster_config |
|
|
String cluster_config |
|
|
|
|
|
|
|
|
input: |
|
|
input: |
|
|
read1=read1, |
|
|
read1=read1, |
|
|
read2=read2, |
|
|
read2=read2, |
|
|
|
|
|
disk_size=disk_size, |
|
|
cluster=cluster_config, |
|
|
cluster=cluster_config, |
|
|
docker=fastqc_docker |
|
|
docker=fastqc_docker |
|
|
} |
|
|
} |
|
|
|
|
|
|
|
|
input: |
|
|
input: |
|
|
read1=read1, |
|
|
read1=read1, |
|
|
read2=read2, |
|
|
read2=read2, |
|
|
|
|
|
disk_size, |
|
|
cluster=cluster_config, |
|
|
cluster=cluster_config, |
|
|
docker=fastqscreen_docker, |
|
|
docker=fastqscreen_docker, |
|
|
screen_ref_dir=screen_ref_dir, |
|
|
screen_ref_dir=screen_ref_dir, |