ソースを参照

revise workflow

master
stead99 4年前
コミット
6f3c5d9e27
2個のファイルの変更6行の追加6行の削除
  1. +2
    -2
      inputs
  2. +4
    -4
      workflow.wdl

+ 2
- 2
inputs ファイルの表示

@@ -2,8 +2,8 @@
"{{ project_name }}.read2": "{{ read2 }}",
"{{ project_name }}.disk_size": "{{ disk_size }}",
"{{ project_name }}.cluster_config": "OnDemand bcs.a2.xlarge img-ubuntu-vpc",
"{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
"{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
"{{ project_name }}.fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
"{{ project_name }}.fastqscreen_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
"{{ project_name }}.screen_ref_dir": "/data/home/shangjun/JS_data/source_tree/source_tree/project_code/choppy_app/reference/fastq_screen_reference/",
"{{ project_name }}.fastq_screen_conf": "/data/home/shangjun/JS_data/source_tree/source_tree/project_code/choppy_app/reference/fastq_screen_reference/fastq_screen.conf"
}

+ 4
- 4
workflow.wdl ファイルの表示

@@ -6,8 +6,8 @@ workflow {{ project_name }} {
File fastq_screen_conf
File read1
File read2
String fastqc.docker
String fastqscreen.docker
String fastqc_docker
String fastqscreen_docker
String cluster_config

call fastqc.fastqc as fastqc {
@@ -15,7 +15,7 @@ workflow {{ project_name }} {
read1=read1,
read2=read2,
cluster=cluster_config,
docker=fastqc.docker
docker=fastqc_docker
}

call fastqscreen.fastq_screen as fastqscreen {
@@ -23,7 +23,7 @@ workflow {{ project_name }} {
read1=read1,
read2=read2,
cluster=cluster_config,
docker=fastqscreen.docker,
docker=fastqscreen_docker,
screen_ref_dir=screen_ref_dir,
fastq_screen_conf=fastq_screen_conf
}

読み込み中…
キャンセル
保存