revise input

tasks/fastqc.wdl

@@ -2,6 +2,8 @@ task fastqc {
 	File read1
 	File read2
 	String docker
+	String cluster
+	String disk_size
 
 	command <<<
 		set -o pipefail

tasks/fastqscreen.wdl

@@ -6,6 +6,8 @@ task fastq_screen {
 	String read1name = basename(read1,".fastq.gz")
 	String read2name = basename(read2,".fastq.gz")
 	String docker
+	String cluster
+	String disk_size
 
 	command <<<
 		set -o pipefail
@@ -18,6 +20,9 @@ task fastq_screen {
 
 	runtime {
 		docker:docker
+		systemDisk:"cloud_ssd 40"
+		cluster:cluster_config
+		dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/"
 	}
 	output {
 		File png1 = "${read1name}_screen.png"

workflow.wdl

@@ -11,6 +11,7 @@ workflow {{ project_name }} {
 			input:
 			read1=read1,
 			read2=read2,
+			cluster=cluster_config,
 			docker=fastqc.docker
 		}
 
@@ -18,6 +19,7 @@ workflow {{ project_name }} {
 			input:
 			read1=read1,
 			read2=read2,
+			cluster=cluster_config,
 			docker=fastqscreen.docker,
 			screen_ref_dir=screen_ref_dir,
 			fastq_screen_conf=fastq_screen_conf