1 changed files with 6 additions and 6 deletions
+ 6
- 6
tasks/fastqscreen.wdl
View File
| dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" | dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" | ||||
| } | } | ||||
| output { | output { | ||||
| File png1 = "${read1name}_screen.png" | |||||
| File txt1 = "${read1name}_screen.txt" | |||||
| File html1 = "${read1name}_screen.html" | |||||
| File png2 = "${read2name}_screen.png" | |||||
| File txt2 = "${read2name}_screen.txt" | |||||
| File html2 = "${read2name}_screen.html" | |||||
| File png1 = sub(basename(read1), "\\.(fastq|fq)\\.gz$", "_screen.png") | |||||
| File txt1 = sub(basename(read1), "\\.(fastq|fq)\\.gz$", "_screen.txt") | |||||
| File html1 = sub(basename(read1), "\\.(fastq|fq)\\.gz$", "_screen.html") | |||||
| File png2 = sub(basename(read2), "\\.(fastq|fq)\\.gz$", "_screen.png") | |||||
| File txt2 = sub(basename(read2), "\\.(fastq|fq)\\.gz$", "_screen.txt") | |||||
| File html2 = sub(basename(read2), "\\.(fastq|fq)\\.gz$", "_screen.html") | |||||
| } | } | ||||
| } | } |
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