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687B
687B
Author: Jun Shang Email: shangjunv@163.com Last Updates: 10/05/2022
Requirements
- choppy
- Ali-Cloud
$ source activate choppy
$ choppy install junshang/catreads
$ choppy apps
quick start
$ choppy batch junshang/catreads-latest sample.json --project-name Your_project_name
Input File
Input file samples.json should be in the form of json.
For example:
{
"fq": [
"oss://choppy-cromwell-result/test-choppy/..._lane1_1.fq.gz",
"oss://choppy-cromwell-result/test-choppy/..._lane2_1.fq.gz",
"oss://choppy-cromwell-result/test-choppy/..._lane3_1.fq.gz"
],
"panel_id": "test_1.fq.gz",
"sample_id": "test_1.fq.gz"
}