remove clean

tasks/cat_rename.wdl

@@ -6,8 +6,8 @@ task cat_rename {
 	String cluster_config
 
 	command <<<
-		cat ${raw_name}/clean_data/*_1.fq.gz > ${new_name}_1.fq.gz
-		cat ${raw_name}/clean_data/*_2.fq.gz > ${new_name}_2.fq.gz
+		cat ${raw_name}/*_1.fq.gz > ${new_name}_1.fq.gz
+		cat ${raw_name}/*_2.fq.gz > ${new_name}_2.fq.gz
 	>>>
 
 	runtime {
@@ -21,4 +21,4 @@ task cat_rename {
 		File new_name_fq_1 = "${new_name}_1.fq.gz"
 		File new_name_fq_2 = "${new_name}_2.fq.gz"
 	}
-}
+}