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tasks/cat_rename.wdl
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| @@ -6,8 +6,8 @@ task cat_rename { | |||
| String cluster_config | |||
| command <<< | |||
| cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz | |||
| cat ${raw_name}/clean/*_2.fq.gz > ${new_name}_2.fq.gz | |||
| cat ${raw_name}/clean_data/*_1.fq.gz > ${new_name}_1.fq.gz | |||
| cat ${raw_name}/clean_data/*_2.fq.gz > ${new_name}_2.fq.gz | |||
| >>> | |||
| runtime { | |||
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