1 changed files with 1 additions and 0 deletions
+ 1
- 0
tasks/arcashla.wdl
View File
| @@ -6,6 +6,7 @@ task arcashla { | |||
| command <<< | |||
| mkdir hla_type | |||
| pwd | |||
| ./arcasHLA/arcasHLA extract ${bam} -o ${base}.extracted.fq.gz --paired -t 8 -v | |||
| ./arcasHLA/arcasHLA genotype ${base}.extracted.1.fq.gz ${base}.extracted.2.fq.gz hla_type/${base}.genotype.json | |||
| >>> | |||
Loading…