revise-cluster-config

tasks/arcashla.wdl

@@ -2,7 +2,7 @@ task arcashla {
     File bam
     String base = basename(bam, ".sorted.bam")
     String docker
-    String cluster
+    String cluster_config
     String disk_size
 
     command <<<
@@ -13,7 +13,7 @@ task arcashla {
 
     runtime {
        docker: docker
-       cluster: cluster
+       cluster: cluster_config
        systemDisk: "cloud_ssd 40"
        dataDisk:  "cloud_ssd " + disk_size + " /cromwell_root/"
     }

tasks/hisat2.wdl

@@ -5,7 +5,7 @@ task hisat2 {
    String idx_prefix
    String base = sub(basename(read_1P),"\\.\\S+$", "")
    String docker
-   String cluster
+   String cluster_config
    String disk_size
 
    command {
@@ -15,7 +15,7 @@ task hisat2 {
    
    runtime { 
 		docker: docker 
-		cluster: cluster
+		cluster: cluster_config
 		systemDisk: "cloud_ssd 40"
 		dataDisk:  "cloud_ssd " + disk_size + " /cromwell_root/"
    }

tasks/samtools.wdl

@@ -5,7 +5,7 @@ task samtools {
     String sorted_bam = base + ".sorted.bam"
     String sorted_bam_index = base + ".sorted.bam.bai"
     String docker
-    String cluster
+    String cluster_config
     String disk_size
 
     command <<<
@@ -18,7 +18,7 @@ task samtools {
 
     runtime {
        docker: docker
-       cluster: cluster
+       cluster: cluster_config
        systemDisk: "cloud_ssd 40"
        dataDisk:  "cloud_ssd " + disk_size + " /cromwell_root/"
     }