revise-cluster-config

workflow.wdl

@@ -6,20 +6,33 @@ workflow {{ project_name }} {
 
 	File read1
 	File read2
-    File idx
+        File idx
 	String idx_prefix
-	
+        String disk_size
+	String cluster_config	
 	
 	call hisat2.hisat2 as hisat2 {
-		input: idx=idx, idx_prefix=idx_prefix, read_1P=read1, read_2P=read2
+		input: 
+		idx=idx, 
+		idx_prefix=idx_prefix, 
+		read_1P=read1, 
+		read_2P=read2,
+		disk_size=disk_size,
+		cluster_config=cluster_config
 	}
 
         call samtools.samtools as samtools {
-               input: sam = hisat2.sam
+            input: 
+			sam = hisat2.sam,
+			disk_size=disk_size,
+		    cluster_config=cluster_config
 	}
 
         call arcashla.arcashla as arcashla {
-               input: bam = samtools.out_bam
+            input: 
+			bam = samtools.out_bam,
+			disk_size=disk_size,
+		    cluster_config=cluster_config
 	}