revise-cluster-config

tasks/arcashla.wdl

@@ -3,6 +3,7 @@ task arcashla {
     String base = basename(bam, ".sorted.bam")
     String docker
     String cluster
+    String disk_size
 
     command <<<
        mkdir hla_type

tasks/hisat2.wdl

@@ -6,6 +6,7 @@ task hisat2 {
    String base = sub(basename(read_1P),"\\.\\S+$", "")
    String docker
    String cluster
+   String disk_size
 
    command {
    	 nt=$(nproc)

tasks/samtools.wdl

@@ -6,6 +6,7 @@ task samtools {
     String sorted_bam_index = base + ".sorted.bam.bai"
     String docker
     String cluster
+    String disk_size
 
     command <<<
        set -o pipefail