cnv/workflow.wdl

import "./tasks/cn_mops.wdl" as CNV

workflow {{project_name}} {
	File Tumordir
	File Normaldir
	String TumorBam
	String NormalBam
	String TumorSampleID
	File bed_file
	String docker
	String disk_size
	String cluster_config

	call CNV.CNV as CNV {
		input: 
			Tumordir=Tumordir,
			Normaldir=Normaldir,
			TumorBam=TumorBam,
			NormalBam=NormalBam,
			TumorSampleID=TumorSampleID,
			bed_file=bed_file,
			docker=docker,
			disk_size=disk_size,
			cluster_config=cluster_config
	}
}