{
    "{{ project_name }}.read1": "{{ read1 }}",
    "{{ project_name }}.read2": "{{ read2 }}",
    "{{ project_name }}.gtf": "{{ gtf }}",
    "{{ project_name }}.adapter": "{{ adapter }}",
    "{{ project_name }}.genome_directory": "{{ genome_directory }}",
    "{{ project_name }}.idx_prefix": "{{ idx_prefix }}",
    "{{ project_name }}.baseout": "{{ baseout }}",
    "{{ project_name }}.fastqc.docker": "{{ fastqc_docker }}",
    "{{ project_name }}.fastqc.cluster": "{{ fastqc_cluster }}",
    "{{ project_name }}.trimmomatic.docker": "{{ trimmomatic_docker }}",
    "{{ project_name }}.trimmomatic.cluster": "{{ trimmomatic_cluster }}",
    "{{ project_name }}.tophat2.docker": "{{ tophat2_docker }}",
    "{{ project_name }}.tophat2.cluster": "{{ tophat2_cluster }}",
    "{{ project_name }}.cufflinks.docker": "{{ cufflinks_docker }}",
    "{{ project_name }}.cufflinks.cluster": "{{ cufflinks_cluster }}"
    }