} | } | ||||
output { | output { | ||||
File accepted_hits = "${baseout}/${baseout}.accepted_hits.bam" | |||||
File unmapped_bam = "${baseout}/${baseout}.unmapped.bam" | |||||
File accepted_hits = "${baseout}/accepted_hits.bam" | |||||
File unmapped_bam = "${baseout}/unmapped.bam" | |||||
} | } | ||||
} | } |