2 changed files with 2 additions and 2 deletions
+ 1
- 1
tasks/cufflinks.wdl
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| @@ -5,7 +5,7 @@ task cufflinks { | |||
| String cluster | |||
| command { | |||
| cufflinks -p 8 -o ${baseout} ${bam} | |||
| cufflinks -p 8 -o ${baseout} ${bam} | |||
| } | |||
| runtime { | |||
+ 1
- 1
workflow.wdl
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| @@ -23,7 +23,7 @@ workflow {{ project_name }} { | |||
| call tophat2.tophat2 as tophat2 { | |||
| input: baseout=baseout, read1=read1, read2=read2, gtf=gtf, genome_directory=genome_directory, idx_prefix=idx_prefix | |||
| } | |||
| call cufflinks.cufflinks as cufflinks { | |||
| input: baseout=baseout, bam=tophat2.accepted_hits | |||
| } | |||
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