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defaults
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| "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf", | "gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf", | ||||
| "genome_directory":"oss://pgx-reference-data/reference/tophat2/", | "genome_directory":"oss://pgx-reference-data/reference/tophat2/", | ||||
| "idx_prefix":"tophat2", | "idx_prefix":"tophat2", | ||||
| "adapter": "oss://pgx-reference-data/reference/illumina_adapter/TruSeq3-PE.fa", | |||||
| "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", | "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", | ||||
| "trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8", | "trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8", | ||||
| "tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat2:2.0.14", | "tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat2:2.0.14", |
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inputs
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| "{{ project_name }}.read1": "{{ read1 }}", | "{{ project_name }}.read1": "{{ read1 }}", | ||||
| "{{ project_name }}.read2": "{{ read2 }}", | "{{ project_name }}.read2": "{{ read2 }}", | ||||
| "{{ project_name }}.gtf": "{{ gtf }}", | "{{ project_name }}.gtf": "{{ gtf }}", | ||||
| "{{ project_name }}.adapter": "{ adapter }" | |||||
| "{{ project_name }}.genome_directory": "{{ genome_directory }}", | "{{ project_name }}.genome_directory": "{{ genome_directory }}", | ||||
| "{{ project_name }}.idx_prefix": "{{ idx_prefix }}", | "{{ project_name }}.idx_prefix": "{{ idx_prefix }}", | ||||
| "{{ project_name }}.baseout": "{{ baseout }}", | "{{ project_name }}.baseout": "{{ baseout }}", |
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