1 changed files with 2 additions and 1 deletions
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- 1
tasks/cufflinks.wdl
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| task cufflinks { | task cufflinks { | ||||
| File gtf | File gtf | ||||
| File bam | |||||
| File accepted_hits | File accepted_hits | ||||
| File genome_directory | File genome_directory | ||||
| String idx_prefix | String idx_prefix | ||||
| String docker | String docker | ||||
| command { | command { | ||||
| cufflinks ${gtf} -p 24 -o ${baseout} ${accepted_hits} | |||||
| cufflinks ${gtf} -p 24 -o ${baseout} ${bam} | |||||
| runtime { | runtime { | ||||
| dockerTag: docker | dockerTag: docker |
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